calcPartitionsRef {GenomicDistributions} | R Documentation |
This function is a wrapper for calcPartitions
and calcPartitionPercents
that uses built-in
partitions for a given reference genome assembly.
calcPartitionsRef(query, refAssembly)
query |
A GenomicRanges or GenomicRangesList object with query regions |
refAssembly |
A character vector specifying the reference genome
assembly (*e.g.* 'hg19'). This will be used to grab chromosome sizes
with |
A data.frame indicating the number of query region overlaps in several genomic partitions.
calcPartitionsRef(vistaEnhancers, "hg19")