genomePartitionList {GenomicDistributions} | R Documentation |
Given GRanges for genes, and a GRanges for exons, returns a list of GRanges corresponding to various breakdown of the genome, based on the given annotations; it gives you proximal and core promoters, exons, and introns.
genomePartitionList(genesGR, exonsGR, threeUTRGR = NULL, fiveUTRGR = NULL)
genesGR |
a GRanges object of gene coordinates |
exonsGR |
a GRanges object of exons coordinates |
threeUTRGR |
a GRanges object of 3' UTRs |
fiveUTRGR |
a GRanges object of 5' UTRs |
To be used as a partitionList for calcPartitions
.
A list of GRanges objects, each corresponding to a partition of the genome. Partitions include proximal and core promoters, exons and introns.
partitionList = genomePartitionList(geneModels_hg19$genesGR, geneModels_hg19$exonsGR, geneModels_hg19$threeUTRGR, geneModels_hg19$fiveUTRGR)