calcGCContentRef {GenomicDistributions} | R Documentation |
Given a reference genome as a BSgenome object and some ranges on that reference, this function will return a vector of the same length as the granges object, with percent of Cs and Gs.
calcGCContentRef(query, refAssembly)
query |
A GenomicRanges or GenomicRangesList object with query regions |
refAssembly |
A character vector specifying the reference genome
assembly (*e.g.* 'hg19'). This will be used to grab chromosome sizes with
|
A numeric vector or list of vectors with the GC percentage of the query regions.
## Not run: refAssembly = 'hg19' GCcontent = calcGCContentRef(vistaEnhancers, refAssembly) ## End(Not run)