plotPartitions {GenomicDistributions} | R Documentation |
This function can be used to test a GRanges object against any arbitrary list of genome partitions. The partition list is a priority-ordered list of GRanges objects. Each region in the query will be assigned to a given partition that it overlaps with the highest priority.
plotPartitions(assignedPartitions, numbers = FALSE)
assignedPartitions |
A table holding the frequency of assignment to
each of the partitions. Produced by |
numbers |
logical indicating whether raw overlaps should be plotted instead of the default percentages |
A ggplot object using a barplot to show the distribution of the query regions across a given partition list.
p = calcPartitionsRef(vistaEnhancers, "hg19") partPlot = plotPartitions(p) partCounts = plotPartitions(p, numbers=TRUE)