calcGCContent {GenomicDistributions} | R Documentation |
Given a reference genome as a BSgenome object and some ranges on that reference, this function will return a vector of the same length as the granges object, with percent of Cs and Gs.
calcGCContent(query, ref)
query |
A GenomicRanges or GenomicRangesList object with query regions. |
ref |
Reference genome BSgenome object. |
A numeric vector of list of vectors with the GC percentage of the query regions.
## Not run: bsg = loadBSgenome('hg19') gcvec = calcGCContent(vistaEnhancers, bsg) ## End(Not run)