orfSimilarity {GeneStructureTools} | R Documentation |
calculate percentage of orfB contained in orfA
orfSimilarity(orfA, orfB, substitutionCost = 100)
orfA |
character string of ORF amino acid sequence |
orfB |
character string of ORF amino acid sequence |
substitutionCost |
cost for substitutions in ORF sequences. Set to 1 if substitutions should be weighted equally to insertions and deletions. |
percentage of orfB contained in orfA
Beth Signal
Other ORF annotation: getOrfs
,
getUOrfs
, maxLocation
orfSimilarity("MFGLDIYAGTRSSFRQFSLT","MFGLDIYAGTRSSFRQFSLT") orfSimilarity("MFGLDIYAGTRSSFRQFSLT","MFGLDIYAFRQFSLT") orfSimilarity("MFGLDIYAFRQFSLT","MFGLDIYAGTRSSFRQFSLT") orfSimilarity("MFGLDIYAGTRXXFRQFSLT","MFGLDIYAGTRSSFRQFSLT") orfSimilarity("MFGLDIYAGTRXXFSLT","MFGLDIYAGTRSSFRQFSLT", 1)