formatWhippetEvents {GeneStructureTools} | R Documentation |
Format Whippet co-ordinates as a GRanges object
formatWhippetEvents(whippet)
whippet |
data.frame containing event location information. May be generated by readWhippetDIFFfiles() |
GRanges object with events
Beth Signal
Other whippet data processing: coordinates
,
diffSplicingResults
,
filterWhippetEvents
,
junctions
, readCounts
,
readWhippetDIFFfiles
,
readWhippetDataSet
,
readWhippetJNCfiles
,
readWhippetPSIfiles
,
whippetTranscriptChangeSummary
whippetFiles <- list.files(system.file("extdata","whippet/", package = "GeneStructureTools"), full.names = TRUE) diffFiles <- whippetFiles[grep(".diff", whippetFiles)] whippetDiffSplice <- readWhippetDIFFfiles(diffFiles) whippetCoords <- formatWhippetEvents(whippetDiffSplice)