log_profile_likelihood_REML {GWAS.BAYES}R Documentation

log_profile_likelihood_REML

Description

The log likelihood that needs to be optimized for the full kinship model.

Usage

log_profile_likelihood_REML(x,t,y,d)

Arguments

x

The reduced design matrix with principal components, intercept and SNP of interest

t

Tau value for the random effect term

y

The reduced matrix for the response value of interest

d

The spectral decomposition diagonal matrix of eigen values

Value

This returns the REML value


[Package GWAS.BAYES version 1.1.0 Index]