calculatePSIValues {FRASER} | R Documentation |
This function calculates the PSI values for each junction and splice site based on the FraserDataSet object
calculatePSIValues( fds, types = psiTypes, overwriteCts = FALSE, BPPARAM = bpparam() )
fds |
A |
types |
A vector with the psi types which should be calculated. Default is all of psi5, psi3 and theta. |
overwriteCts |
FALSE or TRUE (the default) the total counts (aka N) will be recalculated based on the existing junction counts (aka K) |
BPPARAM |
the BiocParallel parameters for the parallelization |
FraserDataSet
fds <- createTestFraserDataSet() fds <- calculatePSIValues(fds, types="psi5") ### usually one would run this function for all psi types by using: # fds <- calculatePSIValues(fds)