SC3_Clust {FEAST}R Documentation

SC3 Clustering

Description

SC3 Clustering

Usage

SC3_Clust(Y, k = NULL, input_markers = NULL)

Arguments

Y

A expression matrix. It is recommended to use the raw count matrix.

k

The number of clusters. If it is not provided, k is estimated by the default method in SC3.

input_markers

A character vector including the featured genes. If they are not presented, SC3 will take care of this.

Value

the clustering labels and the featured genes.


[Package FEAST version 1.0.0 Index]