subsetColData {ExperimentSubset}R Documentation

Accessor method for colData from subsets in ExperimentSubset objects

Description

Get colData from a subset.

Set colData to a subset.

Usage

subsetColData(x, subsetName, parentColData)

subsetColData(x, subsetName) <- value

## S4 method for signature 'SubsetRangedSummarizedExperiment,character'
subsetColData(x, subsetName, parentColData)

## S4 replacement method for signature 
## 'SubsetRangedSummarizedExperiment,character,DataFrame'
subsetColData(x, subsetName) <- value

## S4 method for signature 'SubsetSingleCellExperiment,character'
subsetColData(x, subsetName, parentColData)

## S4 replacement method for signature 'SubsetSingleCellExperiment,character,DataFrame'
subsetColData(x, subsetName) <- value

## S4 replacement method for signature 'SubsetSummarizedExperiment,character,DataFrame'
subsetColData(x, subsetName) <- value

## S4 method for signature 'SubsetSummarizedExperiment,character'
subsetColData(x, subsetName, parentColData)

## S4 method for signature 'SubsetSpatialExperiment,character'
subsetColData(x, subsetName, parentColData)

## S4 replacement method for signature 'SubsetSpatialExperiment,character,DataFrame'
subsetColData(x, subsetName) <- value

## S4 method for signature 'SubsetTreeSummarizedExperiment,character'
subsetColData(x, subsetName, parentColData)

## S4 replacement method for signature 'SubsetTreeSummarizedExperiment,character,DataFrame'
subsetColData(x, subsetName) <- value

Arguments

x

ExperimentSubset Input ExperimentSubset object.

subsetName

character(1) Name of the subset to set colData to.

parentColData

logical(1) Logical value indicating if parent colData should be combined or not. Default FALSE.

value

Input DataFrame to store.

Value

The colData from input object.

Input object with colData stored.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
subsetColData(es, "subset1")

[Package ExperimentSubset version 1.2.0 Index]