subsetAssayCount {ExperimentSubset}R Documentation

Count method for subset assays in ExperimentSubset objects

Description

Get the count of the total available subsets and the subset assays inside these subsets in an ExperimentSubset object.

Usage

subsetAssayCount(x)

## S4 method for signature 'SubsetRangedSummarizedExperiment'
subsetAssayCount(x)

## S4 method for signature 'SubsetSingleCellExperiment'
subsetAssayCount(x)

## S4 method for signature 'SubsetSummarizedExperiment'
subsetAssayCount(x)

## S4 method for signature 'SubsetSpatialExperiment'
subsetAssayCount(x)

## S4 method for signature 'SubsetTreeSummarizedExperiment'
subsetAssayCount(x)

Arguments

x

ExperimentSubset Input ExperimentSubset object.

Value

A numeric value representing the sum of the subset count and subset assay count.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
assay(es, "subset1",
subsetAssayName = "subset1pAssay") <- assay(es, "subset1")[,] + 1
subsetAssayCount(es)

[Package ExperimentSubset version 1.2.0 Index]