reducedDimNames<- {ExperimentSubset} | R Documentation |
A wrapper to the reducedDimNames<-
from reducedDims method with additional support for subsets.
reducedDimNames(x, subsetName) <- value ## S4 replacement method for signature 'ANY' reducedDimNames(x, subsetName) <- value ## S4 replacement method for signature 'ANY' reducedDimNames(x, subsetName) <- value ## S4 replacement method for signature 'ANY' reducedDimNames(x, subsetName) <- value
x |
Input |
subsetName |
Specify the name of the subset to which the |
value |
Input value same as |
Input object with reducedDimNames<-
set.
data(sce_chcl, package = "scds") es <- ExperimentSubset(sce_chcl) es <- createSubset(es, "subset1", rows = c(1:1500), cols = c(1:1500), parentAssay = "counts") reducedDims(es, subsetName = "subset1") <- list( PCA_1 = scater::calculatePCA(assay(es, "subset1")), PCA_2 = scater::calculatePCA(assay(es, "subset1"))) reducedDimNames(es, subsetName = "subset1") <- c("rDim1", "rDim2")