deepblue_query_experiment_type {DeepBlueR} | R Documentation |
Filter the query ID for regions associated with experiments of a given type. For example, it is possible to select only peaks using this command with the 'peaks' parameter.
deepblue_query_experiment_type(query_id = NULL, type = NULL, user_key = deepblue_options("user_key"))
query_id |
- A string (Query ID) |
type |
- A string (experiment type (peaks or signal)) |
user_key |
- A string (users token key) |
information - A string (New query ID.)
Other Operating on the data regions: deepblue_aggregate
,
deepblue_binning
,
deepblue_count_regions
,
deepblue_coverage
,
deepblue_distinct_column_values
,
deepblue_extend
,
deepblue_filter_regions
,
deepblue_flank
,
deepblue_get_experiments_by_query
,
deepblue_get_regions
,
deepblue_input_regions
,
deepblue_intersection
,
deepblue_merge_queries
,
deepblue_overlap
,
deepblue_query_cache
,
deepblue_score_matrix
,
deepblue_select_annotations
,
deepblue_select_experiments
,
deepblue_select_regions
,
deepblue_tiling_regions
h3k27ac_regions = deepblue_select_regions( genome ='GRCh38', epigenetic_mark ='H3k27ac', project ='BLUEPRINT Epigenome', chromosome ='chr1') deepblue_query_experiment_type( query_id = h3k27ac_regions, type = "peaks")