deepblue_input_regions {DeepBlueR} | R Documentation |
Upload a set of genomic regions that can be accessed through a query ID. An interesting use case for this command is to upload a set of custom regions for intersecting with genomic regions in DeepBlue to specifically select regions of interest.
deepblue_input_regions(genome = NULL, region_set = NULL, user_key = deepblue_options("user_key"))
genome |
- A string (the target genome) |
region_set |
- A string (Regions in CHROMOSOME START END format) |
user_key |
- A string (users token key) |
id - A string (query id)
Other Operating on the data regions: deepblue_aggregate
,
deepblue_binning
,
deepblue_count_regions
,
deepblue_coverage
,
deepblue_distinct_column_values
,
deepblue_extend
,
deepblue_filter_regions
,
deepblue_flank
,
deepblue_get_experiments_by_query
,
deepblue_get_regions
,
deepblue_intersection
,
deepblue_merge_queries
,
deepblue_overlap
,
deepblue_query_cache
,
deepblue_query_experiment_type
,
deepblue_score_matrix
,
deepblue_select_annotations
,
deepblue_select_experiments
,
deepblue_select_regions
,
deepblue_tiling_regions
regions_set = "chr1 28735 29810 chr1 135124 135563 chr1 327790 328229 chr1 437151 438164 chr1 449273 450544 chr1 533219 534114 chr1 544738 546649 chr1 713984 714547 chr1 762416 763445 chr1 788863 789211" deepblue_input_regions(genome = "hg19", region_set = regions_set)