readBismarkPool {DMRcaller} | R Documentation |
This function takes as input a vector of CX report file produced by Bismark
and returns a GRanges
object with four metadata columns
(see methylationDataList
). The file represents the pooled
bisulfite sequencing data.
readBismarkPool(files)
files |
The filenames (including path) of the methylation (CX report generated with Bismark) to be read |
the methylation data stored as a GRanges
object with four metadata columns (see methylationDataList
).
Nicolae Radu Zabet and Jonathan Michael Foonlan Tsang
# load methylation data object data(methylationDataList) # save the two datasets saveBismark(methylationDataList[["WT"]], "chr3test_a_thaliana_wt.CX_report") saveBismark(methylationDataList[["met1-3"]], "chr3test_a_thaliana_met13.CX_report") # reload the two datasets and pool them filenames <- c("chr3test_a_thaliana_wt.CX_report", "chr3test_a_thaliana_met13.CX_report") methylationDataPool <- readBismarkPool(filenames)