CoreSet-class {CoreGx}R Documentation

CoreSet - A generic data container for molecular profiles and treatment response data

Description

CoreSet - A generic data container for molecular profiles and treatment response data

Details

The CoreSet (CSet) class was developed as a superclass for pSets in the PharmacoGx and RadioGx packages to contain the data generated in screens of cancer cell lines for their genetic profile and sensitivities to therapy (Pharmacological or Radiation). This class is meant to be a superclass which is contained within the PharmacoSet (pSet) and RadioSet (RSet) objects exported by PharmacoGx and RadioGx. The format of the data is similar for both pSets and rSets, allowing much of the code to be abstracted into the CoreSet super-class. However, the models involved with quantifying cellular response to Pharmacological and Radiation therapy are widely different, and extension of the cSet class allows the packages to apply the correct model for the given data.

Slots

annotation

See Slots section.

molecularProfiles

See Slots section.

cell

See Slots section.

curation

See Slots section.

sensitivity

See Slots section.

perturbation

See Slots section.

curation

See Slots section.

datasetType

See Slots section.

Slots

See Also

CoreSet-accessors


[Package CoreGx version 1.4.2 Index]