plotPatternMarkers {CoGAPS} | R Documentation |
heatmap of original data clustered by pattern markers statistic
plotPatternMarkers( object, data, patternPalette, sampleNames, samplePalette = NULL, heatmapCol = bluered, colDenogram = TRUE, scale = "row", ... )
object |
an object of type CogapsResult |
data |
the original data as a matrix |
patternPalette |
a vector indicating what color should be used for each pattern |
sampleNames |
names of the samples to use for labeling |
samplePalette |
a vector indicating what color should be used for each sample |
heatmapCol |
pallelet giving color scheme for heatmap |
colDenogram |
logical indicating whether to display sample denogram |
scale |
character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. The default is "row". |
... |
additional graphical parameters to be passed to |
heatmap of the data
values for the patternMarkers