separate_BAM_into_clusters {ChromSCape}R Documentation

Separate BAM files into cell cluster BAM files

Description

Separate BAM files into cell cluster BAM files

Usage

separate_BAM_into_clusters(affectation, odir, merged_bam)

Arguments

affectation

An annotation data.frame containing cell_id and cell_cluster columns

odir

A valid output directory path

merged_bam

A list of merged bam file paths

@importFrom Rsamtools filterBam ScanBamParam

Value

Create one BAM per cluster from one BAM per condition


[Package ChromSCape version 1.2.62 Index]