run_pairwise_tests {ChromSCape}R Documentation

Run pairwise tests

Description

Run pairwise tests

Usage

run_pairwise_tests(
  affectation,
  nclust,
  counts,
  feature,
  method,
  progress = NULL,
  BPPARAM = BiocParallel::bpparam()
)

Arguments

affectation

An annotation data.frame with cell_cluster and cell_id columins

nclust

Number of clusters

counts

Count matrix

feature

Feature data.frame

method

DA method, Wilcoxon or edgeR

progress

A shiny Progress instance to display progress bar.

BPPARAM

BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session.

Value

A list containing objects for DA function


[Package ChromSCape version 1.2.62 Index]