results_enrichmentTest {ChromSCape}R Documentation

Resutls of hypergeometric gene set enrichment test

Description

Run hypergeometric enrichment test and combine significant pathways into a data.frame

Usage

results_enrichmentTest(
  differentialGenes,
  enrichment_qval,
  GeneSets,
  GeneSetsDf,
  GenePool
)

Arguments

differentialGenes

Genes significantly over / under expressed

enrichment_qval

Adusted p-value threshold above which a pathway is considered significative

GeneSets

List of pathways

GeneSetsDf

Data.frame of pathways

GenePool

Pool of possible genes for testing

Value

A data.frame with pathways passing q.value threshold


[Package ChromSCape version 1.2.62 Index]