import_count_input_files {ChromSCape} | R Documentation |
Import and count input files depending on their format
import_count_input_files( files_dir_list, file_type, which, ref, verbose, progress, BPPARAM = BiocParallel::bpparam() )
files_dir_list |
A named list of directories containing the input files. |
file_type |
Input file type. |
which |
A GRanges object of features. |
ref |
Reference genome. |
verbose |
Print ? |
progress |
A progress object for Shiny. |
BPPARAM |
BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session. |
A list with the feature indexes data.frame containing non-zeroes entries in the count matrix and the cell names