load_MSIGdb {ChromSCape}R Documentation

Load and format MSIGdb pathways using msigdbr package

Description

Load and format MSIGdb pathways using msigdbr package

Usage

load_MSIGdb(ref, GeneSetClasses)

Arguments

ref

Reference genome, either mm10 or hg38

GeneSetClasses

Which classes of MSIGdb to load

Value

A list containing the GeneSet (list), GeneSetDf (data.frame) and GenePool character vector of all possible genes


[Package ChromSCape version 1.2.62 Index]