chicagoData {Chicago} | R Documentation |
chicagoData
class.
Constructor for the chicagoData
class.
chicagoData(...)
... |
Arguments passed to |
While this function can be used to create a chicagoData
object, most users will use the setExperiment
function instead.
A chicagoData
object has three slots, accessed as follows:
* intData(cd)
is a data.table (note: not a data.frame) that contains information about fragment pairs.
* settings(cd)
is a list of settings, usually set with the setExperiment() function. For more information about valid settings, please see defaultSettings
. To modify the settings, use modifySettings
.
* params(cd)
is a list of parameters. CHiCAGO estimates these automatically, as part of the pipeline.
Mikhail Spivakov, Jonathan Cairns, Paula Freire Pritchett
setExperiment
, defaultSettings
cd <- chicagoData()