.cluster_permute_test {CellaRepertorium}R Documentation

Cell permutation tests (internal)

Description

Cell permutation tests (internal)

Usage

.cluster_permute_test(
  labels,
  covariates,
  strata,
  statistic,
  n_perm,
  alternative,
  ...
)

Arguments

labels

factor of length n

covariates

data.frame of length n

strata

factor

statistic

function of label (vector) and covariate (data.frame). Must return a scalar

n_perm

number of permutations to run

alternative

character naming the direction statistic should be fall under the alternative hypothesis

...

passed along to statistic

Value

a list containing the observed value of the statistic, its expectation (under independence), a p-value, and the Monte Carlo standard error (of the expected value).


[Package CellaRepertorium version 1.2.0 Index]