telom_centrom {CNVgears} | R Documentation |
Generate blacklist for telomeric and centromeric regions
telom_centrom(DT_in, telom = TRUE, centrom = TRUE, region = 50000)
DT_in, |
a |
telom, |
logical, should be telomeric blacklist be produced? |
centrom, |
logical, should be centromeric blacklist be produced? |
region, |
integer. How many basepairs large should the regions be? The centromeric region will be twice this large. |
, a data.table
that can be passed to
cleaning_filter
as blacklist.
DT <- telom_centrom(hg19_start_end_centromeres)