expressionClasses {CAGEr} | R Documentation |
Retrieves labels of expression classes of either individual CTSSs or consensus clusters from a CAGEset object.
expressionClasses(object, what = c("CTSS", "consensusClusters")) ## S4 method for signature 'CAGEset' expressionClasses(object, what = c("CTSS", "consensusClusters")) ## S4 method for signature 'CAGEexp' expressionClasses(object, what = c("CTSS", "consensusClusters"))
object |
A |
what |
Which level of expression clustering should be used. Can be either
|
Returns character vector of labels of expression classes. The number of labels
matches the number of expression clusters returned by getExpressionProfiles
function.
getExpressionProfiles
plotExpressionProfiles
extractExpressionClass
exprClasses <- expressionClasses(exampleCAGEset, what = "CTSS") exprClasses