quickTSSs {CAGEfightR}R Documentation

Identify and quantify Transcription Start Sites (TSSs).

Description

A convienient wrapper around calcTPM, calcPooled, tuneTagClustering, clusterUnidirectionally and quantifyClusters.

Usage

quickTSSs(object)

Arguments

object

RangedSummarizedExperiment: Location and counts of CTSSs, usually found by calling quantifyCTSSs.

Value

RangedSummarizedExperiment containing location and counts of TSSs

See Also

Other Wrapper functions: quickEnhancers(), quickGenes()

Examples

# See the CAGEfightR vignette for an overview!

[Package CAGEfightR version 1.12.0 Index]