heteroLociTrack {BubbleTree} | R Documentation |
get the heteroLoci track
heteroLociTrack(.Object, result.dat, gr2, hetero.gr = NULL, min.prev = 0.15, ymax = 4.3, cex = 0.5) ## S4 method for signature 'TrackPlotter' heteroLociTrack(.Object, result.dat, gr2, hetero.gr = NULL, min.prev = 0.15, ymax = 4.3, cex = 0.5)
.Object |
the object |
result.dat |
the results |
gr2 |
the gr2 object |
hetero.gr |
hetero annotation |
min.prev |
previous min |
ymax |
max y |
cex |
the cex |
the highlightted heterozygosity track
load(system.file("data", "allCall.lst.RData", package="BubbleTree")) load(system.file("data", "centromere.dat.rda", package="BubbleTree")) load(system.file("data", "allHetero.lst.RData", package="BubbleTree")) load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree")) trackplotter <- new("TrackPlotter") gr2 = centromere.dat nn <- "sam2" z1 <- heteroLociTrack(trackplotter, allCall.lst[[nn]]@result, gr2, allHetero.lst[[nn]])