SFT_fit {BioNERO}R Documentation

Pick power to fit network to a scale-free topology

Description

Pick power to fit network to a scale-free topology

Usage

SFT_fit(exp, net_type = "signed", rsquared = 0.8, cor_method = "spearman")

Arguments

exp

A gene expression data frame with genes in row names and samples in column names or a 'SummarizedExperiment' object.

net_type

Network type. One of 'signed', 'signed hybrid' or 'unsigned'. Default is signed.

rsquared

R squared cutoff. Default is 0.8.

cor_method

Correlation method. One of "pearson", "biweight" or "spearman". Default is "spearman".

Value

A list containing:

Author(s)

Fabricio Almeida-Silva

See Also

pickSoftThreshold

Examples

data(filt.se)
sft <- SFT_fit(filt.se, cor_method="pearson")

[Package BioNERO version 1.0.4 Index]