module_stability {BioNERO} | R Documentation |
Perform module stability analysis
module_stability(exp, net, nRuns = 20)
exp |
A gene expression data frame with genes in row names and samples in column names or a 'SummarizedExperiment' object. |
net |
List object returned by |
nRuns |
Number of times to resample. Default is 20. |
A base plot with the module stability results.
sampledBlockwiseModules
,matchLabels
,plotDendroAndColors
data(filt.se) # The SFT fit was previously calculated and the optimal power was 16 gcn <- exp2gcn(filt.se, SFTpower = 18, cor_method = "pearson") # For simplicity, only 2 runs module_stability(exp = filt.se, net = gcn, nRuns = 2)