merge_transcriptome_and_intergenic {BgeeCall} | R Documentation |
This function will create a file corresponding to the concatenation of the transcriptome fasta file provided by the user and the corresponding intergenic fasta file created by Bgee.
merge_transcriptome_and_intergenic( myKallistoMetadata, myBgeeMetadata, myUserMetadata )
myKallistoMetadata |
A Reference Class KallistoMetadata object. |
myBgeeMetadata |
A Reference Class BgeeMetadata object. |
myUserMetadata |
A Reference Class UserMetadata object. |
save merged file on the hard drive
Julien Wollbrett.
{ bgee <- new('BgeeMetadata', intergenic_release = '0.1') user <- new ('UserMetadata', species_id = '6239') kallisto <- new('KallistoMetadata') user <- setTranscriptomeFromFile(user, system.file("extdata", "transcriptome.fa", package = "BgeeCall"), 'WBcel235') merge_transcriptome_and_intergenic(kallisto, bgee, user) }