batchqc_circosplot {BatchQC} | R Documentation |
Produce Circos plot
batchqc_circosplot(dat, batch, AggMethod)
dat |
Given data or simulated data from rnaseq_sim() |
batch |
Batch covariate |
AggMethod |
Aggregation Method |
Generates Circular Dendrogram plot for the given data
nbatch <- 3 ncond <- 2 npercond <- 10 data.matrix <- rnaseq_sim(ngenes=50, nbatch=nbatch, ncond=ncond, npercond= npercond, basemean=10000, ggstep=50, bbstep=2000, ccstep=800, basedisp=100, bdispstep=-10, swvar=1000, seed=1234) batch <- rep(1:nbatch, each=ncond*npercond) batchqc_circosplot(data.matrix, batch=batch, AggMethod='complete')