old_boxplot_cluster_gex {BPRMeth}R Documentation

(DEPRECATED) Boxplot of clustered expression levels

Description

(DEPRECATED) boxplot_cluster_gex creates a boxplot of clustered gene expression levels which depend on the clustered methylation profiles. Each colour denotes a different cluster.

Usage

old_boxplot_cluster_gex(
  bpr_cluster_obj,
  gex,
  main_lab = "Gene expression levels"
)

Arguments

bpr_cluster_obj

The output of the bpr_cluster_wrap function.

gex

The vector of gene expression data for each promoter region.

main_lab

The title of the plot

Value

The figure to be plotted in the device.

Author(s)

C.A.Kapourani C.A.Kapourani@ed.ac.uk

See Also

old_plot_cluster_prof, old_plot_fitted_profiles

Examples

# Cluster methylation profiles using 4 RBFs
obs <- meth_data
basis <- create_rbf_object(M = 4)
res   <- bpr_cluster_wrap(x = obs, K = 3, em_max_iter = 2, opt_itnmax = 3,
                          init_opt_itnmax = 2, is_parallel = FALSE)

# Create the plot
old_boxplot_cluster_gex(bpr_cluster_obj = res, gex = gex_data)


[Package BPRMeth version 1.18.0 Index]