write.agdex.gset.details {AGDEX} | R Documentation |
A function to write an output file with detailed AGDEX gene-set result.
write.agdex.gset.details(gset.details, out.file)
gset.details |
result produced by get.gset.result.details |
out.file |
name of the output file |
the path and name of output file of the result of gene-level agdex analysis
Stan Pounds <stanley.pounds@stjude.org; Cuilan Lani Gao <cuilan.gao@stjude.org>
agdex
; get.gset.result.details
; read.agdex.gset.details
# load the saved result run agdex routine data(agdex.res) # obtain all gene-set result gset.res.all <- get.gset.result.details(agdex.res,gset.ids = NULL, alpha=0.01) # obtain the gene set result of memember genes gset.res0 <- get.gset.result.details(agdex.res,gset.ids = "DNA_CATABOLIC_PROCESS", alpha=0.01) # write the gene set details to an output file ## Not run: write.agdex.gset.details(gset.res0, "gset.details.txt") ## End(Not run)