normMethod {ABSSeq} | R Documentation |
Accessor functions for the 'normMethod' information in a ABSDataSet object.
## S4 method for signature 'ABSDataSet' normMethod(object) ## S4 replacement method for signature 'ABSDataSet,character' normMethod(object)<-value
object |
an |
value |
a character object, should be one of 'user', 'qtoatl', 'total', 'quartile' and 'geometric'.
See |
The 'normMethod' is the method for calculating the size factors. Currently, Four methods: 'user', 'qtoatl', 'total', 'quartile' and 'DESeq' are available.
data(simuN5) obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups)) normMethod(obj) normMethod(obj) <- "geometric" normMethod(obj)