A long list of species is included. Select the wanted species in the drop down menu.
If you experience any problems with any of the species, please
contact us by sending an e-mail to the PeptideShaker Google Group or
by reporting an issue at the PeptideShaker homepage.
As a default only human GO term to protein mappings are included. The other species can be downloaded if needed.
Simply select the species in the drop down menu and click the Download button to start downloading
the GO term to protein mappings for that species. For species where the mappings already have been downloaded
these can be updated to the current release of Ensembl by clicking the Update button.
PeptideShaker always uses the latest version of Ensembl when downloading the GO term to protein mappings. The version used for a given species is shown behind the species name in the species drop down menu. Ensembl is updated with the latest data on a monthly basis and each version is given a number, e.g., Ensembl 66.