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Hierarchy For All Packages
Package Hierarchies:
examples
,
melting
,
melting.approximativeMethods
,
melting.configuration
,
melting.correctionMethods
,
melting.exceptions
,
melting.handlers
,
melting.ionCorrection.magnesiumCorrections
,
melting.ionCorrection.mixedNaMgCorrections
,
melting.ionCorrection.sodiumCorrections
,
melting.ionCorrection.sodiumEquivalence
,
melting.methodInterfaces
,
melting.nearestNeighborModel
,
melting.otherCorrections.dmsoCorrections
,
melting.otherCorrections.formamideCorrections
,
melting.patternModels
,
melting.patternModels.cngPatterns
,
melting.patternModels.cricksPair
,
melting.patternModels.InternalLoops
,
melting.patternModels.longBulge
,
melting.patternModels.longDanglingEnds
,
melting.patternModels.secondDanglingEnds
,
melting.patternModels.singleBulge
,
melting.patternModels.singleDanglingEnds
,
melting.patternModels.singleMismatch
,
melting.patternModels.specificAcids
,
melting.patternModels.tandemMismatches
,
melting.patternModels.wobble
,
melting.sequences
,
meltinggui
,
meltinggui.dialogs
,
meltinggui.frames
,
meltinggui.widgets
,
tmp
Class Hierarchy
java.lang.
Object
melting.approximativeMethods.
ApproximativeMode
(implements melting.methodInterfaces.
MeltingComputationMethod
)
melting.approximativeMethods.
Ahsen01
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
MarmurChester62_93
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
MarmurChester62_93_corr
melting.approximativeMethods.
MarmurSchildkrautDoty
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
Owen69
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
Santalucia98
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
Wetmur91
melting.approximativeMethods.
WetmurDNA91
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
WetmurDNARNA91
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
WetmurRNA91
(implements melting.methodInterfaces.
NamedMethod
)
meltinggui.
ArgsMessage
melting.sequences.
BasePair
melting.otherCorrections.formamideCorrections.
Blake96FormamideCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
meltinggui.widgets.
ComboBoxOption
melting.
CompatibleMain
java.awt.
Component
(implements java.awt.image.
ImageObserver
, java.awt.
MenuContainer
, java.io.
Serializable
)
java.awt.
Container
javax.swing.
JComponent
(implements java.io.
Serializable
)
javax.swing.
JComboBox
<E> (implements javax.accessibility.
Accessible
, java.awt.event.
ActionListener
, java.awt.
ItemSelectable
, javax.swing.event.
ListDataListener
)
meltinggui.dialogs.
IonConcentrationDialog
(implements meltinggui.dialogs.
DialogInterface
)
meltinggui.widgets.
MeltingComboBox
(implements meltinggui.widgets.
InputWidgetInterface
)
meltinggui.widgets.
HybridizationWidget
javax.swing.
JInternalFrame
(implements javax.accessibility.
Accessible
, javax.swing.
RootPaneContainer
, javax.swing.
WindowConstants
)
meltinggui.frames.
ErrorFrame
meltinggui.frames.
MeltingFrame
javax.swing.
JPanel
(implements javax.accessibility.
Accessible
)
meltinggui.dialogs.
ComboBoxDialog
(implements meltinggui.dialogs.
DialogInterface
)
meltinggui.widgets.
InputFieldArray
<W>
meltinggui.widgets.
InputField
<W> (implements meltinggui.widgets.
InputWidgetInterface
)
meltinggui.dialogs.
HybridizationDialog
(implements meltinggui.dialogs.
DialogInterface
)
meltinggui.dialogs.
OligomerConcentrationDialog
(implements meltinggui.dialogs.
DialogInterface
)
meltinggui.widgets.
OutputField
(implements meltinggui.widgets.
InputWidgetInterface
)
meltinggui.dialogs.
SequenceDialog
(implements meltinggui.dialogs.
DialogInterface
)
meltinggui.dialogs.
ResultsPanel
javax.swing.text.
JTextComponent
(implements javax.accessibility.
Accessible
, javax.swing.
Scrollable
)
javax.swing.
JTextArea
meltinggui.widgets.
MeltingTextArea
(implements meltinggui.widgets.
InputWidgetInterface
)
javax.swing.
JTextField
(implements javax.swing.
SwingConstants
)
meltinggui.widgets.
MeltingTextField
(implements meltinggui.widgets.
InputWidgetInterface
)
java.awt.
Window
(implements javax.accessibility.
Accessible
)
java.awt.
Frame
(implements java.awt.
MenuContainer
)
javax.swing.
JFrame
(implements javax.accessibility.
Accessible
, javax.swing.
RootPaneContainer
, javax.swing.
WindowConstants
)
meltinggui.
MeltingGui
(implements java.util.
Observer
)
meltinggui.
MeltingLayoutTest
meltinggui.frames.
OuterFrame
melting.
DataCollect
org.xml.sax.helpers.
DefaultHandler
(implements org.xml.sax.
ContentHandler
, org.xml.sax.
DTDHandler
, org.xml.sax.
EntityResolver
, org.xml.sax.
ErrorHandler
)
melting.handlers.
NodeHandler
melting.handlers.
DataHandler
melting.handlers.
EnergyHandler
melting.handlers.
ThermoHandler
melting.correctionMethods.
DNADMSOCorrections
(implements melting.methodInterfaces.
CorrectionMethod
)
melting.otherCorrections.dmsoCorrections.
Ahsen01DMSOCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.otherCorrections.dmsoCorrections.
Cullen76DMSOCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.otherCorrections.dmsoCorrections.
Escara80DMSOCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.otherCorrections.dmsoCorrections.
Musielski81DMSOCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.correctionMethods.
EntropyCorrection
(implements melting.methodInterfaces.
CorrectionMethod
)
melting.ionCorrection.sodiumCorrections.
Ahsen01SodiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Santalucia98_04SodiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.magnesiumCorrections.
Tan06MagnesiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Tan06SodiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.magnesiumCorrections.
Tan07MagnesiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.mixedNaMgCorrections.
Tan07MixedNaMgCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Tan07SodiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.
Environment
melting.
FileReader
melting.otherCorrections.formamideCorrections.
FormamideLinearMethod
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
java.util.logging.
Formatter
melting.
MeltingFormatter
meltinggui.frames.
FrameScreenPosition
(implements java.io.
Serializable
)
melting.ionCorrection.sodiumCorrections.
FrankKamenetskii71SodiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
meltinggui.frames.
GuiScreenPositions
(implements java.io.
Serializable
)
melting.
Helper
melting.
Main
examples.
MainTest
examples.
MainTestApproximativeMode
examples.
MainTestApproximativeModeMeltingC
examples.
MainTestAzobenzene
examples.
MainTestCNGSequences
examples.
MainTestDNADanglingEndMeltingC
examples.
MainTestDNAMagnesiumCorrections
examples.
MainTestDNAMismatchesMeltingC
examples.
MainTestDNASodiumCorrections
examples.
MainTestGUBasePairs
examples.
MainTestHydroxyadenine
examples.
MainTestInosineBasePairs
examples.
MainTestInosineMelting4_3
examples.
MainTestInternalLoop
examples.
MainTestLockedAcidNucleic
examples.
MainTestLongDanglingEnd
examples.
MainTestMeltingC4_3PerfectMatching
examples.
MainTestMeltingCPerfectMatching
examples.
MainTestNaEqMethods
examples.
MainTestPerfectMatching
examples.
MainTestSecondDanglingEnd
examples.
MainTestSingleBulgeLoops
examples.
MainTestSingleDanglingEnd
examples.
MainTestSingleMismatches
examples.
MainTestTandemMismatches
melting.ionCorrection.sodiumCorrections.
MarmurSchildkrautDoty98_62SodiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
meltinggui.
MeltingCalculator
meltinggui.
MeltingLayout
(implements java.awt.
LayoutManager2
, java.io.
Serializable
)
melting.configuration.
MethodText
melting.nearestNeighborModel.
NearestNeighborMode
(implements melting.methodInterfaces.
MeltingComputationMethod
)
melting.sequences.
NucleotidSequences
java.util.
Observable
meltinggui.
MeltingObservable
melting.configuration.
OptionManagement
melting.ionCorrection.sodiumCorrections.
Owczarzy04SodiumCorrection19
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Owczarzy04SodiumCorrection20
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Owczarzy04SodiumCorrection21
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Owczarzy04SodiumCorrection22
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.magnesiumCorrections.
Owczarzy08MagnesiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.mixedNaMgCorrections.
Owczarzy08MixedNaMgCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.
PatternComputation
(implements melting.methodInterfaces.
PatternComputationMethod
)
melting.patternModels.singleMismatch.
AllawiSantaluciaPeyret97_98_99mm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.tandemMismatches.
AllawiSantaluciaPeyret97_98_99tanmm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.specificAcids.
Asanuma05Azobenzene
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cngPatterns.
Broda05CNGRepeats
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
CricksNNMethod
melting.patternModels.cricksPair.
DecomposedInitiation
melting.patternModels.cricksPair.
AllawiSantalucia97
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Tanaka04
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Freier86
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
GlobalInitiation
melting.patternModels.cricksPair.
Breslauer86
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Santalucia96
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Santalucia04
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Sugimoto95
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Sugimoto96
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Turner06
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Xia98
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleBulge.
GlobalSingleBulgeLoopMethod
melting.patternModels.singleBulge.
Serra07SingleBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleBulge.
Tanaka04SingleBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.wobble.
InosineNNMethod
melting.patternModels.wobble.
Santalucia05Inosine
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.wobble.
Znosko07Inosine
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.specificAcids.
McTigue04LockedAcid
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.InternalLoops.
Santalucia04InternalLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.longBulge.
Santalucia04LongBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleBulge.
Santalucia04SingleBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.secondDanglingEnds.
SecondDanglingEndMethod
melting.patternModels.secondDanglingEnds.
Serra05DoubleDanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.secondDanglingEnds.
Serra06DoubleDanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.wobble.
Serra12Wobble
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleDanglingEnds.
SingleDanglingEndMethod
melting.patternModels.singleDanglingEnds.
Bommarito00SingleDanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleDanglingEnds.
Serra06_08SingleDanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.specificAcids.
Sugimoto01Hydroxyadenine
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.longDanglingEnds.
SugimotoLongDanglingEndMethod
melting.patternModels.longDanglingEnds.
Sugimoto02DNADanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.longDanglingEnds.
Sugimoto02RNADanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.InternalLoops.
Turner06InternalLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleMismatch.
Turner06mm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.longBulge.
Turner99_06LongBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleBulge.
Turner99_06SingleBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.tandemMismatches.
Turner99_06tanmm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.wobble.
Turner99Wobble
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleMismatch.
Watkins11mm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.InternalLoops.
Znosko071x2Loop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleMismatch.
ZnoskoMethod
melting.patternModels.singleMismatch.
Znosko07mm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleMismatch.
Znosko08mm
(implements melting.methodInterfaces.
NamedMethod
)
melting.configuration.
RegisterMethods
melting.ionCorrection.sodiumCorrections.
Santalucia96SodiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
SchildkrautLifson65SodiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumEquivalence.
SodiumEquivalent
(implements melting.methodInterfaces.
SodiumEquivalentMethod
)
melting.ionCorrection.sodiumEquivalence.
Ahsen01_NaEquivalent
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumEquivalence.
Mitsuhashi96NaEquivalent
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumEquivalence.
Peyret00_NaEquivalent
(implements melting.methodInterfaces.
NamedMethod
)
melting.
Thermodynamics
melting.
ThermoResult
java.lang.
Throwable
(implements java.io.
Serializable
)
java.lang.
Exception
java.lang.
RuntimeException
melting.exceptions.
FileException
melting.exceptions.
MethodNotApplicableException
melting.exceptions.
NoExistingMethodException
melting.exceptions.
NoExistingOutputFileException
melting.exceptions.
NucleicAcidNotKnownException
melting.exceptions.
OptionSyntaxError
melting.exceptions.
SequenceException
melting.exceptions.
ThermodynamicParameterError
melting.ionCorrection.sodiumCorrections.
Wetmur91SodiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
tmp.
WriteOutMethods
Interface Hierarchy
melting.methodInterfaces.
CorrectionMethod
meltinggui.dialogs.
DialogInterface
meltinggui.widgets.
InputWidgetInterface
melting.methodInterfaces.
MeltingComputationMethod
melting.methodInterfaces.
NamedMethod
melting.methodInterfaces.
PatternComputationMethod
melting.methodInterfaces.
SodiumEquivalentMethod
Enum Hierarchy
java.lang.
Object
java.lang.
Enum
<E> (implements java.lang.
Comparable
<T>, java.io.
Serializable
)
melting.configuration.
RegisterMethods.MethodType
melting.sequences.
SpecificAcidNames
meltinggui.
ArgsMessage.ArgumentType
meltinggui.
MeltingLayout.ComponentGroupType
meltinggui.
MeltingLayout.Size
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
Prev
Next
Frames
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