This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see tidySummarizedExperiment.
Bioconductor version: 3.12
tidySummarizedExperiment is an adapter that abstracts the 'SingleCellExperiment' container in the form of tibble and allows the data manipulation, plotting and nesting using 'tidyverse'
Author: Stefano Mangiola [aut, cre]
Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>
Citation (from within R,
enter citation("tidySummarizedExperiment")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("tidySummarizedExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tidySummarizedExperiment")
HTML | R Script | Overview of the tidySummarizedExperiment package |
Reference Manual |
biocViews | AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Transcriptomics |
Version | 1.0.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (0.5 years) |
License | GPL-3 |
Depends | R (>= 4.0.0), SummarizedExperiment |
Imports | tibble (>= 3.0.4), dplyr, magrittr, tidyr, ggplot2, rlang, purrr, lifecycle, methods, plotly, utils, S4Vectors, tidyselect, ellipsis, pillar, stringr, cli, fansi |
LinkingTo | |
Suggests | BiocStyle, testthat, knitr, markdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | tidySummarizedExperiment_1.0.0.tar.gz |
Windows Binary | tidySummarizedExperiment_1.0.0.zip |
macOS 10.13 (High Sierra) | tidySummarizedExperiment_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/tidySummarizedExperiment |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tidySummarizedExperiment |
Package Short Url | https://bioconductor.org/packages/tidySummarizedExperiment/ |
Package Downloads Report | Download Stats |
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