shinyTANDEM

DOI: 10.18129/B9.bioc.shinyTANDEM    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see shinyTANDEM.

Provides a GUI for rTANDEM

Bioconductor version: 3.12

This package provides a GUI interface for rTANDEM. The GUI is primarily designed to visualize rTANDEM result object or result xml files. But it will also provides an interface for creating parameter objects, launching searches or performing conversions between R objects and xml files.

Author: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Maintainer: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("shinyTANDEM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyTANDEM")

 

PDF		shinyTANDEM user guide
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	ImmunoOncology, MassSpectrometry, Proteomics, Software
Version	1.28.0
In Bioconductor since	BioC 2.13 (R-3.0) (7.5 years)
License	GPL-3
Depends	rTANDEM(>= 1.3.5), shiny, mixtools, methods, xtable
Imports
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Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	shinyTANDEM_1.28.0.tar.gz
Windows Binary	shinyTANDEM_1.28.0.zip
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/shinyTANDEM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/shinyTANDEM
Package Short Url	https://bioconductor.org/packages/shinyTANDEM/
Package Downloads Report	Download Stats