This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pathprintGEOData.
Bioconductor version: 3.12
Algorithms to convert a gene expression array provided as an expression table or a GEO reference to a 'pathway fingerprint', a vector of discrete ternary scores representing high (1), low(-1) or insignificant (0) expression in a suite of pathways.
Author: Gabriel Altschuler, Sokratis Kariotis
Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
Citation (from within R,
enter citation("pathprint")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("pathprint")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | GeneExpression, KEGG, Reactome, Software, Transcription |
Version | 1.20.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (4 years) |
License | GPL |
Depends | R (>= 3.4) |
Imports | stats, utils |
LinkingTo | |
Suggests | ALL, GEOquery, pathprintGEOData, SummarizedExperiment |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | pathprintGEOData |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/pathprint |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pathprint |
Package Short Url | https://bioconductor.org/packages/pathprint/ |
Package Downloads Report | Download Stats |
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