netbenchmark

DOI: 10.18129/B9.bioc.netbenchmark    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see netbenchmark.

Benchmarking of several gene network inference methods

Bioconductor version: 3.12

This package implements a benchmarking of several gene network inference algorithms from gene expression data.

Author: Pau Bellot, Catharina Olsen, Patrick Meyer

Maintainer: Pau Bellot <pau.bellot at upc.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netbenchmark")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	GeneExpression, GraphAndNetwork, Microarray, Network, NetworkInference, Software
Version	1.22.0
In Bioconductor since	BioC 3.1 (R-3.2) (6 years)
License	CC BY-NC-SA 4.0
Depends	grndata(>= 0.99.3)
Imports	Rcpp (>= 0.11.0), minet, GENIE3, c3net, PCIT, GeneNet, tools, pracma, Matrix, corpcor, fdrtool
LinkingTo	Rcpp
Suggests	RUnit, BiocGenerics, knitr, graph
SystemRequirements
Enhances
URL	https://imatge.upc.edu/netbenchmark/
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/netbenchmark
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/netbenchmark
Package Short Url	https://bioconductor.org/packages/netbenchmark/
Package Downloads Report	Download Stats