XVector

DOI: 10.18129/B9.bioc.XVector    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see XVector.

Foundation of external vector representation and manipulation in Bioconductor

Bioconductor version: 3.12

Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).

Author: Hervé Pagès and Patrick Aboyoun

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XVector")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DataRepresentation, Infrastructure, Software
Version	0.30.0
In Bioconductor since	BioC 2.13 (R-3.0) (7.5 years)
License	Artistic-2.0
Depends	R (>= 2.8.0), methods, BiocGenerics(>= 0.19.2), S4Vectors(>= 0.27.12), IRanges(>= 2.23.9)
Imports	methods, utils, tools, zlibbioc, BiocGenerics, S4Vectors, IRanges
LinkingTo	S4Vectors, IRanges
Suggests	Biostrings, drosophila2probe, RUnit
SystemRequirements
Enhances
URL	https://bioconductor.org/packages/XVector
BugReports	https://github.com/Bioconductor/XVector/issues
Depends On Me	Biostrings, triplex
Imports Me	BSgenome, ChIPsim, CNEr, compEpiTools, dada2, DECIPHER, gcrma, GenomicFeatures, GenomicRanges, Gviz, HiLDA, IONiseR, IsoformSwitchAnalyzeR, kebabs, MatrixRider, Modstrings, R453Plus1Toolbox, ribosomeProfilingQC, Rsamtools, rtracklayer, Structstrings, TFBSTools, tracktables, tRNA, tRNAscanImport, VariantAnnotation
Suggests Me	IRanges, musicatk
Links To Me	Biostrings, CNEr, DECIPHER, kebabs, MatrixRider, Rsamtools, rtracklayer, ShortRead, triplex, VariantAnnotation, VariantFiltering
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	XVector_0.30.0.tar.gz
Windows Binary	XVector_0.30.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	XVector_0.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/XVector
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/XVector
Package Short Url	https://bioconductor.org/packages/XVector/
Package Downloads Report	Download Stats