This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see SimFFPE.
Bioconductor version: 3.12
This package simulates artifact chimeric reads specifically generated in next-generation sequencing (NGS) process of formalin-fixed paraffin-embedded (FFPE) tissue.
Author: Lanying Wei
Maintainer: Lanying Wei <lanying.wei at uni-muenster.de>
Citation (from within R,
enter citation("SimFFPE")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SimFFPE")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SimFFPE")
R Script | An introduction to SimFFPE | |
Reference Manual | ||
Text | NEWS |
biocViews | Alignment, DataImport, MultipleComparison, SequenceMatching, Sequencing, Software |
Version | 1.2.0 |
In Bioconductor since | BioC 3.11 (R-4.0) (1 year) |
License | LGPL-3 |
Depends | Biostrings |
Imports | dplyr, foreach, doParallel, truncnorm, GenomicRanges, IRanges, Rsamtools, parallel, graphics, stats, utils, methods |
LinkingTo | |
Suggests | BiocStyle |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | SimFFPE_1.2.0.tar.gz |
Windows Binary | SimFFPE_1.2.0.zip |
macOS 10.13 (High Sierra) | SimFFPE_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SimFFPE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SimFFPE |
Package Short Url | https://bioconductor.org/packages/SimFFPE/ |
Package Downloads Report | Download Stats |
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