Omixer

DOI: 10.18129/B9.bioc.Omixer    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see Omixer.

Randomize Samples for -omics Profiling

Bioconductor version: 3.12

Omixer - an R package for multivariate and reproducible randomization with lab-friendly sample layouts. Omixer ensures optimal sample distribution across batches with well-documented methods, and can output intuitive sample sheets for the wet lab if needed.

Author: Lucy Sinke [cre, aut]

Maintainer: Lucy Sinke <l.j.sinke at lumc.nl>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Omixer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Omixer")

 

HTML	R Script	my-vignette
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataRepresentation, ExperimentalDesign, QualityControl, Software, Visualization
Version	1.0.4
In Bioconductor since	BioC 3.12 (R-4.0) (0.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.0.0)
Imports	dplyr, ggplot2, forcats, tibble, gridExtra, magrittr, readr, tidyselect, grid, stats, stringr
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, magick, testthat
SystemRequirements
Enhances
URL
BugReports	l.j.sinke@lumc.nl
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Omixer_1.0.4.tar.gz
Windows Binary	Omixer_1.0.4.zip
macOS 10.13 (High Sierra)	Omixer_1.0.4.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Omixer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Omixer
Package Short Url	https://bioconductor.org/packages/Omixer/
Package Downloads Report	Download Stats