MotIV

DOI: 10.18129/B9.bioc.MotIV    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MotIV.

Motif Identification and Validation

Bioconductor version: 3.12

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier <emercier at bcgsc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MotIV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ChIPSeq, ChIPchip, GenomicSequence, Microarray, MotifAnnotation, Software
Version	1.46.0
In Bioconductor since	BioC 2.6 (R-2.11) (11 years)
License	GPL-2
Depends	R (>= 2.10), graphics, BiocGenerics, GenomicRanges
Imports	methods, stats, grid, S4Vectors, IRanges(>= 1.13.5), Biostrings, lattice, rGADEM, utils
LinkingTo
Suggests	rtracklayer
SystemRequirements	GNU Scientific Library >= 1.6 (http://www.gnu.org/software/gsl/)
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/MotIV
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MotIV
Package Short Url	https://bioconductor.org/packages/MotIV/
Package Downloads Report	Download Stats