LINC

DOI: 10.18129/B9.bioc.LINC    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see LINC.

co-expression of lincRNAs and protein-coding genes

Bioconductor version: 3.12

This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.

Author: Manuel Goepferich, Carl Herrmann

Maintainer: Manuel Goepferich <manuel.goepferich at gmx.de>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LINC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	BiologicalQuestion, GeneExpression, GeneRegulation, Software
Version	1.18.0
In Bioconductor since	BioC 3.4 (R-3.3) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.3.1), methods, stats
Imports	Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png, Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db, clusterProfiler, ggplot2, ReactomePA
LinkingTo	Rcpp
Suggests	RUnit, BiocGenerics, knitr, biomaRt
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/LINC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LINC
Package Short Url	https://bioconductor.org/packages/LINC/
Package Downloads Report	Download Stats