This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see Informeasure.
Bioconductor version: 3.12
This package compiles most information measures currently available: mutual information, conditional mutual information, interaction information, partial information decomposition and part mutual information. Using gene expression profile data, all these estimators can be employed to quantify nonlinear dependence between variables in biological regulatory network inference. The first estimator is used to infer bivariate network while the last four estimators are dedicated to analyze trivariate networks.
Author: Chu Pan [aut, cre]
Maintainer: Chu Pan <chu.pan at hnu.edu.cn>
Citation (from within R,
enter citation("Informeasure")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("Informeasure")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Informeasure")
HTML | R Script | Informeasure: a tool to quantify non-linear dependence between variables in biological regulatory networks from an information theory perspective |
Reference Manual | ||
Text | NEWS |
biocViews | GeneExpression, Network, NetworkInference, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (0.5 years) |
License | GPL-3 |
Depends | R (>= 4.0) |
Imports | entropy, matrixStats |
LinkingTo | |
Suggests | knitr, rmarkdown, testthat, SummarizedExperiment |
SystemRequirements | |
Enhances | |
URL | https://github.com/chupan1218/Informeasure |
BugReports | https://github.com/chupan1218/Informeasure/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | Informeasure_1.0.0.tar.gz |
Windows Binary | Informeasure_1.0.0.zip |
macOS 10.13 (High Sierra) | Informeasure_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Informeasure |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Informeasure |
Package Short Url | https://bioconductor.org/packages/Informeasure/ |
Package Downloads Report | Download Stats |
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