This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ImpulseDE2.
Bioconductor version: 3.12
ImpulseDE is suited to capture single impulse-like patterns in high throughput time series datasets. By fitting a representative impulse model to each gene, it reports differentially expressed genes whether across time points in a single experiment or between two time courses from two experiments. To optimize the running time, the code makes use of clustering steps and multi-threading.
Author: Jil Sander [aut, cre], Nir Yosef [aut]
Maintainer: Jil Sander <jil.sander at uni-bonn.de>, Nir Yosef <niryosef at berkeley.edu>
Citation (from within R,
enter citation("ImpulseDE")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("ImpulseDE")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | Software, StatisticalMethod, TimeCourse |
Version | 1.16.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (4.5 years) |
License | GPL-3 |
Depends | graphics, grDevices, stats, utils, parallel, compiler, R (>= 3.2.3) |
Imports | amap, boot |
LinkingTo | |
Suggests | longitudinal, knitr |
SystemRequirements | |
Enhances | |
URL | https://github.com/YosefLab/ImpulseDE |
BugReports | https://github.com/YosefLab/ImpulseDE/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/ImpulseDE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ImpulseDE |
Package Short Url | https://bioconductor.org/packages/ImpulseDE/ |
Package Downloads Report | Download Stats |
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