GenRank

DOI: 10.18129/B9.bioc.GenRank    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GenRank.

Candidate gene prioritization based on convergent evidence

Bioconductor version: 3.12

Methods for ranking genes based on convergent evidence obtained from multiple independent evidence layers. This package adapts three methods that are popular for meta-analysis.

Author: Chakravarthi Kanduri

Maintainer: Chakravarthi Kanduri <chakra.kanduri at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenRank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CopyNumberVariation, GeneExpression, Genetics, Microarray, SNP, Sequencing, Software
Version	1.18.0
In Bioconductor since	BioC 3.3 (R-3.3) (5 years)
License	Artistic-2.0
Depends	R (>= 3.2.3)
Imports	matrixStats, reshape2, survcomp
LinkingTo
Suggests	knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/chakri9/GenRank
BugReports	https://github.com/chakri9/GenRank/issues
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/GenRank
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GenRank
Package Short Url	https://bioconductor.org/packages/GenRank/
Package Downloads Report	Download Stats