GWAS.BAYES

DOI: 10.18129/B9.bioc.GWAS.BAYES    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see GWAS.BAYES.

GWAS for Selfing Species

Bioconductor version: 3.12

This package is built to perform GWAS analysis for selfing species. The research related to this package was supported in part by National Science Foundation Award 1853549.

Author: Jake Williams [aut, cre], Marco Ferreira [aut], Tieming Ji [aut]

Maintainer: Jake Williams <jwilliams at vt.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GWAS.BAYES")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GWAS.BAYES")

 

HTML	R Script	GWAS.BAYES
PDF		Reference Manual
Text		LICENSE

Details

biocViews	AssayDomain, SNP, Software
Version	1.0.0
In Bioconductor since	BioC 3.12 (R-4.0) (0.5 years)
License	GPL-2 | GPL-3
Depends	R (>= 4.0), Rcpp (>= 1.0.3), RcppEigen (>= 0.3.3.7.0), GA (>= 3.2), caret (>= 6.0-86), ggplot2 (>= 3.3.0), doParallel (>= 1.0.15), memoise (>= 1.1.0), reshape2 (>= 1.4.4), Matrix (>= 1.2-18)
Imports
LinkingTo	RcppEigen (>= 0.3.3.7.0), Rcpp (>= 1.0.3)
Suggests	BiocStyle, knitr, rmarkdown, formatR, rrBLUP, qqman
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GWAS.BAYES_1.0.0.tar.gz
Windows Binary	GWAS.BAYES_1.0.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	GWAS.BAYES_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GWAS.BAYES
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GWAS.BAYES
Package Short Url	https://bioconductor.org/packages/GWAS.BAYES/
Package Downloads Report	Download Stats