ArrayTV

DOI: 10.18129/B9.bioc.ArrayTV    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ArrayTV.

Implementation of wave correction for arrays

Bioconductor version: 3.12

Wave correction for genotyping and copy number arrays

Author: Eitan Halper-Stromberg

Maintainer: Eitan Halper-Stromberg <Eitan177 at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ArrayTV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Software
Version	1.28.0
In Bioconductor since	BioC 2.13 (R-3.0) (7.5 years)
License	GPL (>= 2)
Depends	R (>= 2.14)
Imports	methods, foreach, S4Vectors(>= 0.9.25), IRanges(>= 2.13.24), DNAcopy, oligoClasses(>= 1.21.3)
LinkingTo
Suggests	RColorBrewer, crlmm, ff, BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19, lattice, latticeExtra, RUnit, BiocGenerics
SystemRequirements
Enhances	doMC, doSNOW, doParallel
URL
Depends On Me
Imports Me
Suggests Me	VanillaICE
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/ArrayTV
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ArrayTV
Package Short Url	https://bioconductor.org/packages/ArrayTV/
Package Downloads Report	Download Stats