AffiXcan

DOI: 10.18129/B9.bioc.AffiXcan    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see AffiXcan.

A Functional Approach To Impute Genetically Regulated Expression

Bioconductor version: 3.12

Impute a GReX (Genetically Regulated Expression) for a set of genes in a sample of individuals, using a method based on the Total Binding Affinity (TBA). Statistical models to impute GReX can be trained with a training dataset where the real total expression values are known.

Author: Alessandro Lussana [aut, cre]

Maintainer: Alessandro Lussana <alessandro.lussana at protonmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AffiXcan")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffiXcan")

 

HTML	R Script	AffiXcan
PDF		Reference Manual
Text		NEWS

Details

biocViews	DimensionReduction, GeneExpression, GeneRegulation, PrincipalComponent, Regression, Software, Transcription
Version	1.8.0
In Bioconductor since	BioC 3.8 (R-3.5) (2.5 years)
License	GPL-3
Depends	R (>= 3.6), SummarizedExperiment
Imports	MultiAssayExperiment, BiocParallel, crayon
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AffiXcan_1.8.0.tar.gz
Windows Binary	AffiXcan_1.8.0.zip
macOS 10.13 (High Sierra)	AffiXcan_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AffiXcan
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AffiXcan
Package Short Url	https://bioconductor.org/packages/AffiXcan/
Package Downloads Report	Download Stats