write_jaspar {universalmotif} | R Documentation |
Convert motifs to JASPAR format and write to file. See http://jaspar.genereg.net/.
write_jaspar(motifs, file, overwrite = FALSE, append = FALSE)
motifs |
See |
file |
|
overwrite |
|
append |
|
NULL
, invisibly.
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2018). “JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.” Nucleic Acids Research, 46(D1), D260–D266.
Other write_motifs:
write_homer()
,
write_matrix()
,
write_meme()
,
write_motifs()
,
write_transfac()
transfac <- read_transfac(system.file("extdata", "transfac.txt", package = "universalmotif")) write_jaspar(transfac, tempfile())