write_meme {universalmotif} | R Documentation |
Convert motifs to minimal MEME format and write to file. See http://meme-suite.org/doc/meme-format.html.
write_meme(motifs, file, version = 5, bkg, strand, overwrite = FALSE, append = FALSE)
motifs |
See |
file |
|
version |
|
bkg |
|
strand |
|
overwrite |
|
append |
|
NULL
, invisibly.
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS (2009). “MEME SUITE: tools for motif discovery and searching.” Nucleic Acids Research, 37, W202–W208.
Other write_motifs:
write_homer()
,
write_jaspar()
,
write_matrix()
,
write_motifs()
,
write_transfac()
transfac <- read_transfac(system.file("extdata", "transfac.txt", package = "universalmotif")) write_meme(transfac, tempfile())