read_jaspar {universalmotif} | R Documentation |
Import JASPAR formatted motifs. See http://jaspar.genereg.net/. Can be either DNA, RNA, or AA motifs.
read_jaspar(file, skip = 0)
file |
|
skip |
|
list
universalmotif objects.
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2018). “JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.” Nucleic Acids Research, 46(D1), D260–D266.
Other read_motifs:
read_cisbp()
,
read_homer()
,
read_matrix()
,
read_meme()
,
read_motifs()
,
read_transfac()
,
read_uniprobe()
jaspar <- read_jaspar(system.file("extdata", "jaspar.txt", package = "universalmotif"))