plot {trigger} | R Documentation |
Graphical display of genomewide linkage map, multi-locus linkage or eQTL variation
## S4 method for signature 'trigger,missing' plot(x,y,type = c("link", "mlink", "eqtl"), cutoff = 3.3e-4, qcut = 0.1, bin.size = NULL)
x |
An object of class |
y |
Ignore option, not used. |
type |
An argument describing the type of plot. Select from |
cutoff |
Threshold value for |
qcut |
Q-value threshold for |
bin.size |
Optional for |
Lin S. Chen lschen.stat@gmail.com, Dipen P. Sangurdekar dps@genomics.princeton.edu and John D. Storey jstorey@princeton.edu
trigger.link
, trigger.mlink
and trigger.eigenR2
## Not run: data(yeast) attach(yeast) triggerobj <- trigger.build(marker=marker, exp=exp, marker.pos=marker.pos, exp.pos=exp.pos) triggerobj <- trigger.link(triggerobj, gender=NULL, norm=TRUE) plot(triggerobj,type = "link", cutoff=1e-5) triggerobj <- trigger.eigenR2(triggerobj, adjust=FALSE) plot(triggerobj, type = "eigenR2") triggerobj<- trigger.mlink(triggerobj, B=5, seed=123) plot(triggerobj, qcut=0.1, bin.size=NULL) detach(yeast) ## End(Not run)