comparisonPlot {tilingArray}R Documentation

Plot a vertical layout of panels for the comparison of different along-chromosome profiles.

Description

This function is used for Figure 5 in the David et al. (PNAS 2006) paper and in the Huber et al. methods paper.

Usage

comparisonPlot(x, y, xscale=range(x), yscale, anno, ticks, pch=20, cex=1, bgcol="#f2f2f2")

Arguments

x

numeric vector.

y

list of numeric vector, each of same length as x.

xscale

numeric vector of length 2.

yscale

matrix with 2 rows and columns corresponding to the elements of x.

anno

dataframe with columns start, end, and name, each row corresponds to one gene CDS to be plotted at the bottom.

ticks

numeric vector, where to plot the ticks.

pch

A numeric or character vector indicating what sort of plotting symbol to use, see grid.points.

cex

Multiplier applied to fontsize, see gpar.

bgcol

Color to use as background for some of the plot panels.

Value

Function is called for its side-effect.

Author(s)

W. Huber huber@ebi.ac.uk

References

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Examples

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[Package tilingArray version 1.68.0 Index]