test_differential_cellularity_ {tidybulk} | R Documentation |
Get differential composition information to a tibble using edgeR.
test_differential_cellularity_( .data, .formula, .sample = NULL, .transcript = NULL, .abundance = NULL, method = "cibersort", reference = X_cibersort, significance_threshold = 0.05, ... )
.data |
A tibble |
.formula |
a formula with no response variable, referring only to numeric variables |
.sample |
The name of the sample column |
.transcript |
The name of the transcript/gene column |
.abundance |
The name of the transcript/gene abundance column |
method |
A string character. Either "edgeR_quasi_likelihood" (i.e., QLF), "edgeR_likelihood_ratio" (i.e., LRT) |
reference |
A data frame. The transcript/cell_type data frame of integer transcript abundance |
significance_threshold |
A real between 0 and 1 |
A tibble with edgeR results