join_transcripts {tidySingleCellExperiment}R Documentation

Add differential transcription information to a tbl using edgeR.

Description

join_transcripts() extracts and joins information for specific transcripts

Usage

join_transcripts(
  .data,
  transcripts = NULL,
  all = FALSE,
  exclude_zeros = FALSE,
  shape = "long"
)

Arguments

.data

A tidy SingleCellExperiment object

transcripts

A vector of transcript identifiers to join

all

If TRUE return all

exclude_zeros

If TRUE exclude zero values

shape

Format of the returned table "long" or "wide"

Details

Experimental lifecycle

This function extracts information for specified transcripts and returns the information in either long or wide format.

Value

A 'tbl' containing the information.for the specified transcripts

Examples


tidySingleCellExperiment::pbmc_small %>%
    tidy() %>%
    join_transcripts(transcripts=c("HLA-DRA", "LYZ"))

[Package tidySingleCellExperiment version 1.0.0 Index]