direct_targets {target} | R Documentation |
This function selects overlapping peaks and regions, calculates the distance between them, score each peak and region and calculate rank products of the regions.
direct_targets(peaks, regions, regions_col, stats_col, base = 1e+05)
peaks |
A GRanges object |
regions |
A GRanges object |
regions_col |
A character string |
stats_col |
A character string |
base |
An integer to calculate distances relative to. |
A GRanges object. A similar object to regions with several added metadata columns.
# load peaks and transcripts data data("real_peaks") data("real_transcripts") # direct targets dt <- direct_targets(real_peaks, real_transcripts, 'name2', 't')