summarizeHist {strandCheckR} | R Documentation |
Summarize the histogram of positive proportions from the input
windows obtained from the function getWinFromBamFile
summarizeHist(windows, split = c(10, 100, 1000), breaks = 100, useCoverage = FALSE, group_by = NULL, normalize_by = NULL)
windows |
data frame containing the strand information of the sliding
windows. Windows can be obtained using the function |
split |
an integer vector that specifies how you want to partition the
windows based on the coverage. By default |
breaks |
an integer giving the number of bins for the histogram |
useCoverage |
if TRUE then plot the coverage strand information, otherwise plot the number of reads strand information. FALSE by default |
group_by |
the column names of windows that will be used to group the data |
normalize_by |
the column names of windows that will be used to normalize the read count or read coverage into proportion |
a dataframe object
getWinFromBamFile, plotHist, plotWin