calculateStrandNbReads {strandCheckR}R Documentation

Calculate the strand information based the number of reads

Description

Calculate the number of reads coming from '+'/'-' strands in all sliding wndows

Usage

calculateStrandNbReads(winPosAlignments, winNegAlignments)

Arguments

winPosAlignments

a list that has a 'Win' field that contains information of sliding windows overalapping positive reads

winNegAlignments

a a list that has a 'Win' field that contains information of sliding windows overalapping negative reads

Value

a list of two vectors, containing a positive/negative number of reads of the input positive/negative windows


[Package strandCheckR version 1.8.0 Index]