getPConfirmation {stageR} | R Documentation |
stageRClass
object.Return unadjusted confirmation hypothesis p-values from a stageRClass
object.
getPConfirmation(object, ...) ## S4 method for signature 'stageR' getPConfirmation(object) ## S4 method for signature 'stageRTx' getPConfirmation(object)
object |
an object of the |
A matrix of the unadjusted p-values to be used in the confirmation stage.
stageRTx
: Return unadjusted confirmation hypothesis p-values from a stageRClass
object.
pScreen=c(seq(1e-10,1e-2,length.out=100),seq(1e-2,.2,length.out=100),seq(.2,1,length.out=100)) names(pScreen)=paste0("gene",1:300) pConfirmation=matrix(runif(900),nrow=300,ncol=3) dimnames(pConfirmation)=list(paste0("gene",1:300),c("H1","H2","H3")) stageRObj <- stageR(pScreen=pScreen, pConfirmation=pConfirmation) getPConfirmation(stageRObj)