clueVehicle {slinky} | R Documentation |
Fetch the vehicle control applicable to given ids (distil_id). Expects that perturbagen is of type trt_cp.
clueVehicle(x, ids, verbose = FALSE) ## S4 method for signature 'Slinky' clueVehicle(x, ids, verbose = FALSE)
x |
a Slinky Object |
ids |
The distil_id(s) to lookup. |
verbose |
Do you want to know how things are going? Default is FALSE. |
The name of the vehicle control for the queried perturbagen(s). This is a convenience wrapper to the profiles API which queries clue.io and unwraps response.
# for build/demo only. You MUST use your own key when using the slinky # package. user_key <- httr::content(httr::GET('https://api.clue.io/temp_api_key'), as='parsed')$user_key sl <- Slinky(user_key, system.file('extdata', 'demo.gctx', package='slinky'), system.file('extdata', 'demo_inst_info.txt', package = 'slinky')) amox <- clue(sl, where_clause = list("pert_iname" = "amoxicillin", "cell_id" = "MCF7", "is_gold" = TRUE)) amox.ctrl <- clueVehicle(sl, amox$distil_id)