slingBranchID {slingshot} | R Documentation |
Extracts lineage assignments from slingshot
results. This
produces a categorical variable indicating which lineage (or combination of
lineages) each cell is assigned to.
slingBranchID(x, ...) ## S4 method for signature 'ANY' slingBranchID(x, thresh = NULL)
x |
an object containing |
... |
additional arguments passed to object-specific methods. |
thresh |
weight threshold for assigning cells to lineages. A cell's
weight on a certain lineage must be at least this value (default =
|
a factor variable that assigns each cell to a particular lineage or set of lineages.
data("slingshotExample") rd <- slingshotExample$rd cl <- slingshotExample$cl sds <- slingshot(rd, cl) slingBranchID(sds)